| 1 | Annual Review of Biophysics | 24.6 | 99th | Q1 | SCIE | – | No |
| 2 | Nature Structural and Molecular Biology | 15.1 | 97th | Q1 | SCIE | – | No |
| 3 | Current Opinion in Structural Biology | 13.7 | 95th | Q1 | SCIE | – | No |
| 4 | International Journal of Biological Macromolecules | 11.4 | 93rd | Q1 | SCIE | – | No |
| 5 | Journal of Molecular Biology | 8.9 | 91st | Q1 | SCIE | – | No |
| 6 | Biophysical Reviews | 8.3 | 89th | Q1 | ESCI | – | No |
| 7 | BMC Bioinformatics | 8.3 | 87th | Q1 | SCIE | – | Yes |
| 8 | Computational and Structural Biotechnology Journal | 8.2 | 85th | Q1 | SCIE | – | Yes |
| 9 | Journal of Structural Biology: X | 7.9 | 83rd | Q1 | ESCI | – | Yes |
| 10 | BMC Biology | 7.8 | 81st | Q1 | SCIE | – | Yes |
| 11 | Synthetic and Systems Biotechnology | 7.5 | 79th | Q1 | SCIE | – | Yes |
| 12 | Journal of Biomolecular Structure and Dynamics | 7.3 | 77th | Q1 | SCIE | – | No |
| 13 | Structure | 7.2 | 75th | Q1 | SCIE | – | No |
| 14 | Acta Crystallographica Section D: Structural Biology | 7.1 | 73rd | Q2 | SCIE | – | No |
| 15 | Molecular Informatics | 6.8 | 71st | Q2 | SCIE | – | No |
| 16 | Frontiers in Bioinformatics | 6.6 | 69th | Q2 | ESCI | – | Yes |
| 17 | Current Research in Structural Biology | 6.5 | 67th | Q2 | ESCI | – | Yes |
| 18 | Proteomes | 6.4 | 65th | Q2 | ESCI | – | Yes |
| 19 | Journal of Molecular Recognition | 6.4 | 63rd | Q2 | SCIE | – | No |
| 20 | Biochimica et Biophysica Acta - Gene Regulatory Mechanisms | 6.1 | 61st | Q2 | SCIE | – | No |
| 21 | FEBS Letters | 5.8 | 59th | Q2 | SCIE | – | No |
| 22 | Traffic | 5.6 | 57th | Q2 | SCIE | – | No |
| 23 | Proteins: Structure, Function and Genetics | 5.5 | 55th | Q2 | SCIE | – | No |
| 24 | Computational Biology and Chemistry | 5.2 | 53rd | Q2 | SCIE | – | No |
| 25 | Journal of Structural Biology | 4.6 | 51st | Q2 | SCIE | – | No |
| 26 | Journal of the American Society for Mass Spectrometry | 4.6 | 50th | Q2 | SCIE | – | No |
| 27 | Micron | 4.5 | 48th | Q3 | SCIE | – | No |
| 28 | NAR Genomics and Bioinformatics | 4.1 | 46th | Q3 | ESCI | – | Yes |
| 29 | Advances in Protein Chemistry and Structural Biology | 4 | 44th | Q3 | – | – | No |
| 30 | Bioinformatics Advances | 3.9 | 42nd | Q3 | ESCI | – | Yes |
| 31 | Microscopy (Oxford, England) | 3.9 | 40th | Q3 | SCIE | – | No |
| 32 | Crystallography Reviews | 3.8 | 38th | Q3 | SCIE | – | No |
| 33 | Physical Biology | 3.8 | 36th | Q3 | SCIE | – | No |
| 34 | Journal of Peptide Science | 3.8 | 34th | Q3 | SCIE | – | No |
| 35 | Methods and Protocols | 3.4 | 32nd | Q3 | ESCI | – | Yes |
| 36 | Algorithms for Molecular Biology | 3.3 | 30th | Q3 | SCIE | – | Yes |
| 37 | Egyptian Journal of Basic and Applied Sciences | 3.1 | 28th | Q3 | – | – | No |
| 38 | Journal of Biochemical Technology | 2.9 | 26th | Q3 | – | – | No |
| 39 | Protein and Peptide Letters | 2.8 | 24th | Q4 | SCIE | – | No |
| 40 | Biophysics Reports | 2.6 | 22nd | Q4 | – | – | Yes |
| 41 | Acta Crystallographica Section A: Foundations and Advances | 2.4 | 20th | Q4 | SCIE | – | No |
| 42 | AIMS Biophysics | 2.4 | 18th | Q4 | ESCI | – | No |
| 43 | Ultrastructural Pathology | 2.3 | 16th | Q4 | SCIE | – | No |
| 44 | Digest Journal of Nanomaterials and Biostructures | 2.3 | 14th | Q4 | SCIE | – | Yes |
| 45 | Cytoskeleton | 2.2 | 12th | Q4 | SCIE | – | No |
| 46 | Canadian Entomologist | 2.1 | 10th | Q4 | SCIE | – | No |
| 47 | Acta Crystallographica Section F:Structural Biology Communications | 1.9 | 8th | Q4 | SCIE | – | No |
| 48 | Frontiers in Chemical Biology | 1.7 | 6th | Q4 | – | – | Yes |
| 49 | Molecular Biology | 1.7 | 4th | Q4 | SCIE | – | No |
| 50 | Biomolecular NMR Assignments | 1.3 | 2nd | Q4 | SCIE | – | No |
| 51 | Acta Anatomica Sinica | 0.4 | 0th | Q4 | – | – | No |