| 1 | Nature Reviews Microbiology | 124 | 99th | Q1 | SCIE | – | No |
| 2 | Clinical Microbiology Reviews | 28.9 | 97th | Q1 | SCIE | – | No |
| 3 | EMBO Journal | 13.6 | 96th | Q1 | SCIE | – | Yes |
| 4 | Microbiology and Molecular Biology Reviews | 12.8 | 94th | Q1 | SCIE | – | No |
| 5 | Molecular Systems Biology | 11.7 | 92nd | Q1 | SCIE | – | Yes |
| 6 | BioMed Research International | 9.4 | 91st | Q1 | ESCI | – | No |
| 7 | PLOS Biology | 9.2 | 89th | Q1 | SCIE | – | Yes |
| 8 | Transboundary and Emerging Diseases | 8.2 | 88th | Q1 | SCIE | – | No |
| 9 | Journal of Biosafety and Biosecurity | 8.2 | 86th | Q1 | ESCI | – | Yes |
| 10 | Journal of Microbiology, Immunology and Infection | 7.8 | 84th | Q1 | SCIE | – | Yes |
| 11 | Microbiology Spectrum | 7.5 | 83rd | Q1 | SCIE | – | Yes |
| 12 | Biology | 7.3 | 81st | Q1 | SCIE | – | Yes |
| 13 | Pathogens | 6.7 | 80th | Q1 | SCIE | – | Yes |
| 14 | Vaccine | 6.4 | 78th | Q1 | SCIE | – | No |
| 15 | Pathogens and Disease | 6.3 | 76th | Q1 | – | – | No |
| 16 | Infectious Medicine | 6.2 | 75th | Q1 | ESCI | – | Yes |
| 17 | Proceedings of the Royal Society B: Biological Sciences | 6.1 | 73rd | Q2 | SCIE | – | No |
| 18 | Tropical Medicine and Infectious Disease | 6 | 72nd | Q2 | SCIE | – | Yes |
| 19 | MicroLife | 5.8 | 70th | Q2 | ESCI | – | Yes |
| 20 | Frontiers in Bioscience - Landmark | 5.7 | 69th | Q2 | SCIE | – | Yes |
| 21 | Frontiers in Bioscience - Scholar | 5.5 | 67th | Q2 | – | – | Yes |
| 22 | Frontiers in Bioscience - Elite | 5.4 | 65th | Q2 | – | – | Yes |
| 23 | Zoonoses and Public Health | 5.3 | 64th | Q2 | SCIE | – | No |
| 24 | Iranian Journal of Basic Medical Sciences | 5.2 | 62nd | Q2 | SCIE | – | Yes |
| 25 | Avian Pathology | 4.8 | 61st | Q2 | SCIE | – | No |
| 26 | Infectious Diseases | 4.4 | 59th | Q2 | SCIE | – | No |
| 27 | Current Protocols | 4.4 | 57th | Q2 | ESCI | – | No |
| 28 | Vaccine: X | 4.2 | 56th | Q2 | ESCI | – | Yes |
| 29 | Journal of Theoretical Biology | 4 | 54th | Q2 | SCIE | – | No |
| 30 | Biometrics | 3.6 | 53rd | Q2 | SCIE | – | No |
| 31 | Journal of Applied Biomedicine | 3.6 | 51st | Q2 | SCIE | – | Yes |
| 32 | Biologicals | 3.4 | 50th | Q2 | SCIE | – | No |
| 33 | Open Microbiology Journal | 3.3 | 48th | Q3 | – | – | No |
| 34 | Open Life Sciences | 3.3 | 46th | Q3 | SCIE | – | Yes |
| 35 | Mathematical Biosciences | 3.2 | 45th | Q3 | SCIE | – | No |
| 36 | Acta Microbiologica et Immunologica Hungarica | 3.1 | 43rd | Q3 | SCIE | – | No |
| 37 | GERMS | 2.9 | 42nd | Q3 | ESCI | – | No |
| 38 | F1000Research | 2.9 | 40th | Q3 | – | – | Yes |
| 39 | Journal of Microbiology and Biology Education | 2.8 | 38th | Q3 | ESCI | – | Yes |
| 40 | Avian Diseases | 2.8 | 37th | Q3 | SCIE | – | No |
| 41 | Archives of Razi Institute | 2.6 | 35th | Q3 | – | – | Yes |
| 42 | STAR Protocols | 2.5 | 34th | Q3 | ESCI | – | Yes |
| 43 | Indian Journal of Medical Microbiology | 2.2 | 32nd | Q3 | SCIE | – | No |
| 44 | Mathematical Medicine and Biology | 2 | 30th | Q3 | SCIE | – | No |
| 45 | Bio-protocol | 1.7 | 29th | Q3 | ESCI | – | Yes |
| 46 | Journal of Visualized Experiments | 1.7 | 27th | Q3 | SCIE | – | No |
| 47 | World Academy of Sciences Journal | 1.5 | 26th | Q3 | – | – | No |
| 48 | Journal of Applied and Natural Science | 1.5 | 24th | Q4 | – | – | No |
| 49 | Journal of Bioscience and Applied Research | 1.5 | 23rd | Q4 | – | – | Yes |
| 50 | Mikrobiyoloji Bulteni | 1.5 | 21st | Q4 | SCIE | – | No |
| 51 | Comptes Rendus - Biologies | 1.3 | 19th | Q4 | SCIE | – | Yes |
| 52 | Doklady Biological Sciences | 1.2 | 18th | Q4 | – | – | No |
| 53 | Academia Biology | 1 | 16th | Q4 | – | – | Yes |
| 54 | International Journal of Biological and Chemical Sciences | 0.9 | 15th | Q4 | – | – | No |
| 55 | Egyptian Journal of Medical Microbiology (Egypt) | 0.8 | 13th | Q4 | – | – | No |
| 56 | Mediterranean Journal of Infection, Microbes and Antimicrobials | 0.8 | 11th | Q4 | ESCI | – | Yes |
| 57 | Avicenna Journal of Clinical Microbiology and Infection | 0.8 | 10th | Q4 | – | – | No |
| 58 | Annales de Biologie Clinique | 0.7 | 8th | Q4 | SCIE | – | No |
| 59 | Acta Biomedica Scientifica | 0.6 | 7th | Q4 | – | – | Yes |
| 60 | Journal of Tropical Pathology | 0.4 | 5th | Q4 | – | – | No |
| 61 | Laboratory Diagnostics. Eastern Europe | 0.3 | 3rd | Q4 | – | – | No |
| 62 | One Health and Risk Management | 0.2 | 2nd | Q4 | – | – | Yes |
| 63 | Journal of Knowledge and Health in Basic Medical Sciences | 0.2 | 0th | Q4 | – | – | No |