| 1 | Clinical Microbiology Reviews | 28.9 | 99th | Q1 | SCIE | – | No |
| 2 | Nature Microbiology | 28.8 | 98th | Q1 | SCIE | – | No |
| 3 | Trends in Microbiology | 25.9 | 98th | Q1 | SCIE | – | No |
| 4 | The Lancet Microbe | 24.8 | 97th | Q1 | SCIE | – | Yes |
| 5 | Microbiome | 23 | 96th | Q1 | SCIE | – | Yes |
| 6 | Gut Microbes | 19.5 | 96th | Q1 | SCIE | – | Yes |
| 7 | Food Packaging and Shelf Life | 19.4 | 95th | Q1 | SCIE | – | No |
| 8 | Clinical Infectious Diseases | 17.1 | 94th | Q1 | SCIE | – | No |
| 9 | Clinical Microbiology and Infection | 17.1 | 94th | Q1 | SCIE | – | No |
| 10 | Current Opinion in Microbiology | 14.9 | 93rd | Q1 | SCIE | – | No |
| 11 | Eurosurveillance | 13.6 | 92nd | Q1 | SCIE | – | Yes |
| 12 | British Journal of Biomedical Science | 12.7 | 92nd | Q1 | SCIE | – | Yes |
| 13 | Antibiotics | 10.2 | 91st | Q1 | SCIE | – | Yes |
| 14 | Journal of Infection | 10.1 | 90th | Q1 | SCIE | – | Yes |
| 15 | Frontiers in Microbiology | 9.9 | 90th | Q1 | SCIE | – | Yes |
| 16 | Frontiers in Cellular and Infection Microbiology | 9.6 | 89th | Q1 | SCIE | – | Yes |
| 17 | Emerging Infectious Diseases | 9.5 | 88th | Q1 | SCIE | – | Yes |
| 18 | Infectious Diseases and Therapy | 9.3 | 88th | Q1 | SCIE | – | Yes |
| 19 | International Journal of Infectious Diseases | 9.1 | 87th | Q1 | SCIE | – | Yes |
| 20 | Expert Review of Anti-Infective Therapy | 9.1 | 86th | Q1 | SCIE | – | No |
| 21 | Progress in Microbes and Molecular Biology | 8.8 | 86th | Q1 | – | – | Yes |
| 22 | Journal of Fungi | 8.7 | 85th | Q1 | SCIE | – | Yes |
| 23 | Antimicrobial Resistance and Infection Control | 8.4 | 84th | Q1 | SCIE | – | Yes |
| 24 | International Journal of Antimicrobial Agents | 8.3 | 84th | Q1 | SCIE | – | No |
| 25 | Microorganisms | 8.2 | 83rd | Q1 | SCIE | – | Yes |
| 26 | Current Research in Microbial Sciences | 8.2 | 82nd | Q1 | ESCI | – | Yes |
| 27 | Journal of Oral Microbiology | 8.2 | 81st | Q1 | SCIE | – | Yes |
| 28 | Journal of Clinical Microbiology | 8.1 | 81st | Q1 | SCIE | – | Yes |
| 29 | Journal of Clinical Laboratory Analysis | 8.1 | 80th | Q1 | SCIE | – | Yes |
| 30 | Infectious Disease Clinics of North America | 8 | 79th | Q1 | SCIE | – | No |
| 31 | Journal of Microbiology, Immunology and Infection | 7.8 | 79th | Q1 | SCIE | – | Yes |
| 32 | Annals of Clinical Microbiology and Antimicrobials | 7.6 | 78th | Q1 | SCIE | – | Yes |
| 33 | AIMS Microbiology | 7.6 | 77th | Q1 | ESCI | – | No |
| 34 | Microbiology Spectrum | 7.5 | 77th | Q1 | SCIE | – | Yes |
| 35 | Infection | 7.4 | 76th | Q1 | SCIE | – | No |
| 36 | Virulence | 7.2 | 75th | Q1 | SCIE | – | Yes |
| 37 | Current Opinion in Infectious Diseases | 7 | 75th | Q1 | SCIE | – | No |
| 38 | Molecular Oral Microbiology | 7 | 74th | Q2 | SCIE | – | No |
| 39 | Animal Microbiome | 6.9 | 73rd | Q2 | ESCI | – | Yes |
| 40 | Pathogens | 6.7 | 73rd | Q2 | SCIE | – | Yes |
| 41 | Current Topics in Microbiology and Immunology | 6.7 | 72nd | Q2 | – | – | No |
| 42 | Journal of Antimicrobial Chemotherapy | 6.6 | 71st | Q2 | SCIE | – | No |
| 43 | BMC Microbiology | 6.5 | 71st | Q2 | SCIE | – | Yes |
| 44 | Pathogens and Disease | 6.3 | 70th | Q2 | – | – | No |
| 45 | Infectious Medicine | 6.2 | 69th | Q2 | ESCI | – | Yes |
| 46 | Microbial Risk Analysis | 6.1 | 69th | Q2 | SCIE | – | No |
| 47 | Journal of Global Antimicrobial Resistance | 6.1 | 68th | Q2 | SCIE | – | Yes |
| 48 | Medical Microbiology and Immunology | 5.9 | 67th | Q2 | SCIE | – | No |
| 49 | Journal of Hospital Infection | 5.8 | 67th | Q2 | SCIE | – | No |
| 50 | Infection Control and Hospital Epidemiology | 5.8 | 66th | Q2 | SCIE | – | No |
| 51 | Biosafety and Health | 5.6 | 65th | Q2 | ESCI | – | Yes |
| 52 | Beneficial Microbes | 5.5 | 64th | Q2 | SCIE | – | No |
| 53 | hLife | 5.5 | 64th | Q2 | – | – | Yes |
| 54 | Infection, Genetics and Evolution | 5.5 | 63rd | Q2 | SCIE | – | Yes |
| 55 | Current Clinical Microbiology Reports | 5.4 | 62nd | Q2 | ESCI | – | No |
| 56 | JAC-Antimicrobial Resistance | 5.3 | 62nd | Q2 | ESCI | – | Yes |
| 57 | Canadian Journal of Infectious Diseases and Medical Microbiology | 5.3 | 61st | Q2 | SCIE | – | Yes |
| 58 | International Journal of Microbiology | 5.3 | 60th | Q2 | ESCI | – | Yes |
| 59 | Infezioni in Medicina | 5.1 | 60th | Q2 | – | – | No |
| 60 | Microbial Drug Resistance | 5 | 59th | Q2 | SCIE | – | No |
| 61 | European Journal of Clinical Microbiology and Infectious Diseases | 5 | 58th | Q2 | SCIE | – | No |
| 62 | Frontiers in Antibiotics | 5 | 58th | Q2 | ESCI | – | Yes |
| 63 | Current Issues in Molecular Biology | 5 | 57th | Q2 | SCIE | – | Yes |
| 64 | Journal of Water and Health | 4.8 | 56th | Q2 | SCIE | – | Yes |
| 65 | European Journal of Microbiology and Immunology | 4.6 | 56th | Q2 | ESCI | – | No |
| 66 | Revista Espanola de Quimioterapia | 4.5 | 55th | Q2 | SCIE | – | Yes |
| 67 | Infectious Diseases | 4.4 | 54th | Q2 | SCIE | – | No |
| 68 | International Microbiology | 4.4 | 54th | Q2 | SCIE | – | No |
| 69 | Tuberculosis | 4.3 | 53rd | Q2 | SCIE | – | No |
| 70 | Interdisciplinary Perspectives on Infectious Diseases | 4.3 | 52nd | Q2 | – | – | Yes |
| 71 | Pathogens and Immunity | 4.3 | 52nd | Q2 | – | – | Yes |
| 72 | International Journal of Medical Microbiology | 4.2 | 51st | Q2 | SCIE | – | Yes |
| 73 | Future Microbiology | 4.2 | 50th | Q2 | SCIE | – | No |
| 74 | Sage Open Pathology | 4.1 | 50th | Q2 | ESCI | – | No |
| 75 | APMIS | 4.1 | 49th | Q3 | SCIE | – | No |
| 76 | Journal of Medical Microbiology | 3.8 | 48th | Q3 | SCIE | – | No |
| 77 | Frontiers in Tropical Diseases | 3.8 | 47th | Q3 | – | – | Yes |
| 78 | Journal of Microbiological Methods | 3.8 | 47th | Q3 | SCIE | – | No |
| 79 | Revista Argentina de Microbiologia | 3.7 | 46th | Q3 | SCIE | – | Yes |
| 80 | Journal of Clinical Tuberculosis and Other Mycobacterial Diseases | 3.7 | 45th | Q3 | ESCI | – | Yes |
| 81 | Pediatric Infectious Disease Journal | 3.7 | 45th | Q3 | SCIE | – | No |
| 82 | Microbiology Research | 3.5 | 44th | Q3 | ESCI | – | Yes |
| 83 | Revista da Sociedade Brasileira de Medicina Tropical | 3.5 | 43rd | Q3 | SCIE | – | Yes |
| 84 | Polish Journal of Microbiology | 3.4 | 43rd | Q3 | SCIE | – | Yes |
| 85 | PHAGE: Therapy, Applications, and Research | 3.4 | 42nd | Q3 | ESCI | – | No |
| 86 | Brazilian Journal of Infectious Diseases | 3.2 | 41st | Q3 | SCIE | – | Yes |
| 87 | Frontiers in Microbiomes | 3.2 | 41st | Q3 | ESCI | – | Yes |
| 88 | Journal of Infection and Chemotherapy | 3.1 | 40th | Q3 | SCIE | – | No |
| 89 | Acta Microbiologica et Immunologica Hungarica | 3.1 | 39th | Q3 | SCIE | – | No |
| 90 | Clinical Epidemiology and Global Health | 3.1 | 39th | Q3 | ESCI | – | Yes |
| 91 | Sexually Transmitted Diseases | 2.9 | 38th | Q3 | SCIE | – | No |
| 92 | GERMS | 2.9 | 37th | Q3 | ESCI | – | No |
| 93 | Infectious Disorders - Drug Targets | 2.9 | 37th | Q3 | – | – | No |
| 94 | Surgical Infections | 2.9 | 36th | Q3 | SCIE | – | No |
| 95 | Diagnostic Microbiology and Infectious Disease | 2.8 | 35th | Q3 | SCIE | – | No |
| 96 | Japanese Journal of Infectious Diseases | 2.8 | 35th | Q3 | SCIE | – | No |
| 97 | International Journal of Mycobacteriology | 2.7 | 34th | Q3 | ESCI | – | Yes |
| 98 | Microorganisms for Sustainability | 2.7 | 34th | Q3 | – | – | No |
| 99 | Memorias do Instituto Oswaldo Cruz | 2.7 | 32nd | Q3 | SCIE | – | Yes |
| 100 | Methods in Microbiology | 2.6 | 32nd | Q3 | – | – | No |
| 101 | Iranian Journal of Microbiology | 2.6 | 31st | Q3 | ESCI | – | Yes |
| 102 | Enfermedades Infecciosas y Microbiologia Clinica | 2.4 | 30th | Q3 | SCIE | – | No |
| 103 | Indian Dermatology Online Journal | 2.3 | 30th | Q3 | ESCI | – | Yes |
| 104 | Microbiology Australia | 2.3 | 29th | Q3 | ESCI | – | Yes |
| 105 | Antimicrobial Stewardship and Healthcare Epidemiology | 2.3 | 28th | Q3 | ESCI | – | Yes |
| 106 | Indian Journal of Medical Microbiology | 2.2 | 28th | Q3 | SCIE | – | No |
| 107 | New Microbiologica | 2.1 | 27th | Q3 | SCIE | – | No |
| 108 | Access Microbiology | 2.1 | 26th | Q3 | – | – | Yes |
| 109 | Infectious Microbes and Diseases | 2.1 | 26th | Q3 | ESCI | – | Yes |
| 110 | Annals of Parasitology | 1.9 | 25th | Q3 | – | – | No |
| 111 | JAMMI | 1.8 | 24th | Q4 | ESCI | – | No |
| 112 | Reviews and Research in Medical Microbiology | 1.8 | 24th | Q4 | ESCI | – | No |
| 113 | Chinese Journal of Endemiology | 1.8 | 23rd | Q4 | – | – | No |
| 114 | Iranian Journal of Medical Microbiology | 1.8 | 22nd | Q4 | – | – | No |
| 115 | Communicable Diseases Intelligence | 1.7 | 22nd | Q4 | ESCI | – | No |
| 116 | Zhurnal Mikrobiologii Epidemiologii i Immunobiologii | 1.6 | 21st | Q4 | – | – | Yes |
| 117 | Clinical Microbiology Newsletter | 1.5 | 20th | Q4 | – | – | No |
| 118 | Mikrobiyoloji Bulteni | 1.5 | 20th | Q4 | SCIE | – | No |
| 119 | Indian Journal of Pathology and Microbiology | 1.2 | 19th | Q4 | SCIE | – | Yes |
| 120 | Mikrobiolohichnyi Zhurnal | 1.1 | 18th | Q4 | – | – | No |
| 121 | Problemy Osobo Opasnykh Infektsii | 1.1 | 18th | Q4 | – | – | Yes |
| 122 | Chinese Journal of Clinical Infectious Diseases | 1 | 17th | Q4 | – | – | No |
| 123 | Jundishapur Journal of Microbiology | 1 | 16th | Q4 | SCIE | – | No |
| 124 | Kliniceskaa Mikrobiologia i Antimikrobnaa Himioterapia | 1 | 15th | Q4 | – | – | Yes |
| 125 | Epidemiologie, Mikrobiologie, Imunologie | 0.9 | 15th | Q4 | SCIE | – | No |
| 126 | Acta Microbiologica Hellenica (Switzerland) | 0.9 | 14th | Q4 | – | – | Yes |
| 127 | Mediterranean Journal of Infection, Microbes and Antimicrobials | 0.8 | 13th | Q4 | ESCI | – | Yes |
| 128 | Microbes and Infectious Diseases | 0.8 | 13th | Q4 | – | – | No |
| 129 | Travmatologiya i Ortopediya Rossii | 0.8 | 12th | Q4 | ESCI | – | Yes |
| 130 | Avicenna Journal of Clinical Microbiology and Infection | 0.8 | 11th | Q4 | – | – | No |
| 131 | Chinese Journal of Infection and Chemotherapy | 0.7 | 11th | Q4 | – | – | No |
| 132 | Antibiotiki i Khimioterapiya | 0.7 | 10th | Q4 | – | – | Yes |
| 133 | Infectious Diseases and Clinical Microbiology | 0.6 | 9th | Q4 | ESCI | – | No |
| 134 | Klimik Dergisi | 0.6 | 9th | Q4 | ESCI | – | No |
| 135 | Infectio | 0.6 | 8th | Q4 | ESCI | – | Yes |
| 136 | Chinese Journal of Microecology | 0.5 | 7th | Q4 | – | – | No |
| 137 | Phytopathogenic Mollicutes | 0.5 | 7th | Q4 | – | – | No |
| 138 | Turk Hijyen ve Deneysel Biyoloji Dergisi | 0.5 | 6th | Q4 | – | – | No |
| 139 | Extreme Medicine | 0.5 | 5th | Q4 | – | – | No |
| 140 | Infectious Diseases in Clinical Practice | 0.4 | 4th | Q4 | ESCI | – | No |
| 141 | Indonesian Journal of Clinical Pathology and Medical Laboratory | 0.3 | 3rd | Q4 | – | – | No |
| 142 | One Health and Risk Management | 0.2 | 3rd | Q4 | – | – | Yes |
| 143 | Acta Microscopica | 0.2 | 2nd | Q4 | – | – | No |
| 144 | IP International Journal of Medical Microbiology and Tropical Diseases | 0.2 | 1st | Q4 | – | – | No |
| 145 | Klinicka Mikrobiologie a Infekcni Lekarstvi | 0.2 | 1st | Q4 | – | – | No |
| 146 | Enfermedades Infecciosas y Microbiologia | 0.1 | 0th | Q4 | – | – | No |