| 1 | Nature Reviews Microbiology | 124 | 99th | Q1 | SCIE | – | No |
| 2 | iMeta | 43.7 | 99th | Q1 | SCIE | – | Yes |
| 3 | Cell Host and Microbe | 34.9 | 98th | Q1 | SCIE | – | No |
| 4 | Nature Microbiology | 28.8 | 98th | Q1 | SCIE | – | No |
| 5 | FEMS Microbiology Reviews | 26 | 97th | Q1 | SCIE | – | Yes |
| 6 | Trends in Microbiology | 25.9 | 97th | Q1 | SCIE | – | No |
| 7 | The Lancet Microbe | 24.8 | 96th | Q1 | SCIE | – | Yes |
| 8 | Microbiome | 23 | 96th | Q1 | SCIE | – | Yes |
| 9 | Soil Biology and Biochemistry | 21.1 | 95th | Q1 | SCIE | – | No |
| 10 | Gut Microbes | 19.5 | 95th | Q1 | SCIE | – | Yes |
| 11 | ISME Journal | 17.9 | 94th | Q1 | SCIE | – | Yes |
| 12 | Annual Review of Microbiology | 17.2 | 94th | Q1 | SCIE | – | No |
| 13 | Current Opinion in Microbiology | 14.9 | 93rd | Q1 | SCIE | – | No |
| 14 | Critical Reviews in Microbiology | 14.3 | 93rd | Q1 | SCIE | – | No |
| 15 | Emerging Microbes and Infections | 14.1 | 92nd | Q1 | SCIE | – | Yes |
| 16 | Microbiological Research | 14.1 | 92nd | Q1 | SCIE | – | No |
| 17 | Eurosurveillance | 13.6 | 91st | Q1 | SCIE | – | Yes |
| 18 | Fungal Biology Reviews | 13.4 | 90th | Q1 | SCIE | – | No |
| 19 | npj Biofilms and Microbiomes | 12.9 | 90th | Q1 | SCIE | – | Yes |
| 20 | Microbiology and Molecular Biology Reviews | 12.8 | 89th | Q1 | SCIE | – | No |
| 21 | British Journal of Biomedical Science | 12.7 | 89th | Q1 | SCIE | – | Yes |
| 22 | Biology and Fertility of Soils | 12 | 88th | Q1 | SCIE | – | No |
| 23 | Food Microbiology | 10.5 | 88th | Q1 | SCIE | – | No |
| 24 | Foods | 10.3 | 87th | Q1 | SCIE | – | Yes |
| 25 | Antibiotics | 10.2 | 87th | Q1 | SCIE | – | Yes |
| 26 | Engineering Microbiology | 10.1 | 86th | Q1 | ESCI | – | Yes |
| 27 | Probiotics and Antimicrobial Proteins | 10.1 | 86th | Q1 | SCIE | – | No |
| 28 | International Journal of Food Microbiology | 10 | 85th | Q1 | SCIE | – | No |
| 29 | Mycology | 10 | 85th | Q1 | ESCI | – | Yes |
| 30 | Frontiers in Microbiology | 9.9 | 84th | Q1 | SCIE | – | Yes |
| 31 | Frontiers in Cellular and Infection Microbiology | 9.6 | 84th | Q1 | SCIE | – | Yes |
| 32 | Cell Surface | 9.4 | 83rd | Q1 | ESCI | – | Yes |
| 33 | Journal of Umm Al-Qura University for Applied Sciences | 9.2 | 83rd | Q1 | – | – | Yes |
| 34 | Expert Review of Anti-Infective Therapy | 9.1 | 82nd | Q1 | SCIE | – | No |
| 35 | Environmental Microbiology | 9 | 82nd | Q1 | SCIE | – | No |
| 36 | Stress Biology | 8.9 | 81st | Q1 | ESCI | – | Yes |
| 37 | Progress in Microbes and Molecular Biology | 8.8 | 81st | Q1 | – | – | Yes |
| 38 | Biofilm | 8.5 | 80th | Q1 | ESCI | – | Yes |
| 39 | EcoSal Plus | 8.5 | 80th | Q1 | – | – | No |
| 40 | mBio | 8.4 | 79th | Q1 | SCIE | – | Yes |
| 41 | Microorganisms | 8.2 | 79th | Q1 | SCIE | – | Yes |
| 42 | Current Research in Microbial Sciences | 8.2 | 78th | Q1 | ESCI | – | Yes |
| 43 | PLOS Pathogens | 8.2 | 78th | Q1 | SCIE | – | Yes |
| 44 | mSystems | 8.1 | 77th | Q1 | SCIE | – | Yes |
| 45 | Environmental Microbiome | 8 | 77th | Q1 | SCIE | – | Yes |
| 46 | AIMS Microbiology | 7.6 | 76th | Q1 | ESCI | – | No |
| 47 | Virus Evolution | 7.2 | 76th | Q1 | SCIE | – | Yes |
| 48 | mLife | 7.2 | 75th | Q1 | ESCI | – | Yes |
| 49 | Virulence | 7.2 | 75th | Q1 | SCIE | – | Yes |
| 50 | Research in Microbiology | 7.2 | 74th | Q2 | SCIE | – | No |
| 51 | Microbial Genomics | 7.1 | 73rd | Q2 | SCIE | – | Yes |
| 52 | Ticks and Tick-borne Diseases | 7.1 | 73rd | Q2 | SCIE | – | Yes |
| 53 | Molecular Oral Microbiology | 7 | 72nd | Q2 | SCIE | – | No |
| 54 | Pathogens and Global Health | 7 | 72nd | Q2 | SCIE | – | No |
| 55 | International Biodeterioration and Biodegradation | 7 | 71st | Q2 | SCIE | – | No |
| 56 | Journal of Virology | 6.8 | 71st | Q2 | SCIE | – | Yes |
| 57 | Microbiology (United Kingdom) | 6.7 | 70th | Q2 | SCIE | – | Yes |
| 58 | Rhizosphere | 6.7 | 70th | Q2 | SCIE | – | No |
| 59 | Current Topics in Microbiology and Immunology | 6.7 | 69th | Q2 | – | – | No |
| 60 | Microbiome Research Reports | 6.6 | 69th | Q2 | ESCI | – | No |
| 61 | FEMS Microbes | 6.6 | 68th | Q2 | ESCI | – | Yes |
| 62 | Systematic and Applied Microbiology | 6.5 | 68th | Q2 | SCIE | – | No |
| 63 | BMC Microbiology | 6.5 | 67th | Q2 | SCIE | – | Yes |
| 64 | FEMS Microbiology Ecology | 6.5 | 67th | Q2 | SCIE | – | Yes |
| 65 | Advances in Microbial Physiology | 6.5 | 66th | Q2 | – | – | No |
| 66 | Folia Microbiologica | 6.5 | 66th | Q2 | SCIE | – | No |
| 67 | Fungal Systematics and Evolution | 6.5 | 65th | Q2 | – | – | No |
| 68 | Gut Pathogens | 6.4 | 65th | Q2 | SCIE | – | Yes |
| 69 | Geomicrobiology Journal | 6.4 | 64th | Q2 | SCIE | – | No |
| 70 | Journal of Mass Spectrometry and Advances in the Clinical Lab | 6.3 | 64th | Q2 | SCIE | – | No |
| 71 | Frontiers in Fungal Biology | 6.3 | 63rd | Q2 | ESCI | – | Yes |
| 72 | Molecular Microbiology | 6.1 | 63rd | Q2 | SCIE | – | No |
| 73 | Journal of Global Antimicrobial Resistance | 6.1 | 62nd | Q2 | SCIE | – | Yes |
| 74 | Systems Microbiology and Biomanufacturing | 6.1 | 62nd | Q2 | ESCI | – | No |
| 75 | European Journal of Soil Biology | 6 | 61st | Q2 | SCIE | – | No |
| 76 | EFSA Journal | 5.9 | 61st | Q2 | SCIE | – | Yes |
| 77 | Archives of Microbiology | 5.9 | 60th | Q2 | SCIE | – | No |
| 78 | Microbial Pathogenesis | 5.9 | 60th | Q2 | SCIE | – | No |
| 79 | Journal of Bacteriology | 5.8 | 59th | Q2 | SCIE | – | Yes |
| 80 | Infection and Immunity | 5.7 | 59th | Q2 | SCIE | – | Yes |
| 81 | FEMS Yeast Research | 5.6 | 58th | Q2 | SCIE | – | Yes |
| 82 | Anaerobe | 5.6 | 57th | Q2 | SCIE | – | No |
| 83 | ISME Communications | 5.6 | 57th | Q2 | ESCI | – | Yes |
| 84 | Journal of Tropical Medicine | 5.6 | 56th | Q2 | SCIE | – | Yes |
| 85 | Beneficial Microbes | 5.5 | 56th | Q2 | SCIE | – | No |
| 86 | Infection, Genetics and Evolution | 5.5 | 55th | Q2 | SCIE | – | Yes |
| 87 | Innate Immunity | 5.4 | 55th | Q2 | SCIE | – | Yes |
| 88 | Journal of Food Protection | 5.4 | 54th | Q2 | SCIE | – | Yes |
| 89 | Microbial Cell | 5.4 | 54th | Q2 | SCIE | – | Yes |
| 90 | Mycotoxin Research | 5.4 | 53rd | Q2 | SCIE | – | No |
| 91 | JAC-Antimicrobial Resistance | 5.3 | 53rd | Q2 | ESCI | – | Yes |
| 92 | International Journal of Microbiology | 5.3 | 52nd | Q2 | ESCI | – | Yes |
| 93 | Epidemics | 5.2 | 52nd | Q2 | SCIE | – | Yes |
| 94 | Journal of Microbiology | 5.2 | 51st | Q2 | SCIE | – | No |
| 95 | MicrobiologyOpen | 5.1 | 51st | Q2 | SCIE | – | Yes |
| 96 | Microbes and Infection | 5 | 50th | Q2 | SCIE | – | No |
| 97 | mSphere | 5 | 50th | Q2 | SCIE | – | Yes |
| 98 | Biodegradation | 5 | 49th | Q3 | SCIE | – | No |
| 99 | Microbial Drug Resistance | 5 | 49th | Q3 | SCIE | – | No |
| 100 | Current Issues in Molecular Biology | 5 | 48th | Q3 | SCIE | – | Yes |
| 101 | Journal of Eukaryotic Microbiology | 5 | 48th | Q3 | SCIE | – | No |
| 102 | Current Microbiology | 4.6 | 47th | Q3 | SCIE | – | No |
| 103 | Fungal Genetics and Biology | 4.6 | 47th | Q3 | SCIE | – | No |
| 104 | European Journal of Microbiology and Immunology | 4.6 | 46th | Q3 | ESCI | – | No |
| 105 | Extremophiles | 4.5 | 46th | Q3 | SCIE | – | No |
| 106 | Microbiology and Immunology | 4.5 | 45th | Q3 | SCIE | – | No |
| 107 | Comparative Immunology, Microbiology and Infectious Diseases | 4.4 | 45th | Q3 | SCIE | – | No |
| 108 | International Microbiology | 4.4 | 44th | Q3 | SCIE | – | No |
| 109 | Journal of Food Safety | 4.3 | 44th | Q3 | SCIE | – | No |
| 110 | Mycopathologia | 4.3 | 43rd | Q3 | SCIE | – | No |
| 111 | Tuberculosis | 4.3 | 43rd | Q3 | SCIE | – | No |
| 112 | Interdisciplinary Perspectives on Infectious Diseases | 4.3 | 42nd | Q3 | – | – | Yes |
| 113 | International Journal of Medical Microbiology | 4.2 | 42nd | Q3 | SCIE | – | Yes |
| 114 | Veterinary Microbiology | 4.2 | 41st | Q3 | SCIE | – | No |
| 115 | Future Microbiology | 4.2 | 40th | Q3 | SCIE | – | No |
| 116 | Brazilian Journal of Microbiology | 4.1 | 40th | Q3 | SCIE | – | No |
| 117 | Bioscience of Microbiota, Food and Health | 4.1 | 39th | Q3 | SCIE | – | No |
| 118 | Foodborne Pathogens and Disease | 4.1 | 39th | Q3 | SCIE | – | No |
| 119 | Frontiers in Virology | 4.1 | 38th | Q3 | ESCI | – | Yes |
| 120 | New Microbes and New Infections | 3.9 | 38th | Q3 | ESCI | – | Yes |
| 121 | FEMS Microbiology Letters | 3.8 | 37th | Q3 | SCIE | – | No |
| 122 | Journal of Medical Microbiology | 3.8 | 37th | Q3 | SCIE | – | No |
| 123 | Journal of Microbiological Methods | 3.8 | 36th | Q3 | SCIE | – | No |
| 124 | Mycobiology | 3.7 | 36th | Q3 | SCIE | – | Yes |
| 125 | International Journal of Systematic and Evolutionary Microbiology | 3.7 | 35th | Q3 | SCIE | – | No |
| 126 | Revista Argentina de Microbiologia | 3.7 | 35th | Q3 | SCIE | – | Yes |
| 127 | Microbial Physiology | 3.7 | 34th | Q3 | SCIE | – | Yes |
| 128 | Vector-Borne and Zoonotic Diseases | 3.7 | 34th | Q3 | SCIE | – | No |
| 129 | Canadian Journal of Microbiology | 3.6 | 33rd | Q3 | SCIE | – | No |
| 130 | Indian Journal of Microbiology | 3.6 | 33rd | Q3 | SCIE | – | No |
| 131 | European Journal of Protistology | 3.6 | 32nd | Q3 | SCIE | – | No |
| 132 | Microbiology Research | 3.5 | 32nd | Q3 | ESCI | – | Yes |
| 133 | Protist | 3.5 | 31st | Q3 | SCIE | – | No |
| 134 | Polish Journal of Microbiology | 3.4 | 31st | Q3 | SCIE | – | Yes |
| 135 | PHAGE: Therapy, Applications, and Research | 3.4 | 30th | Q3 | ESCI | – | No |
| 136 | Frontiers in Microbiomes | 3.2 | 30th | Q3 | ESCI | – | Yes |
| 137 | Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology | 3.1 | 29th | Q3 | SCIE | – | No |
| 138 | Cellular Microbiology | 2.9 | 29th | Q3 | SCIE | – | Yes |
| 139 | Medical Mycology Journal | 2.9 | 28th | Q3 | ESCI | – | No |
| 140 | NPJ Viruses | 2.8 | 28th | Q3 | ESCI | – | Yes |
| 141 | Microorganisms for Sustainability | 2.7 | 27th | Q3 | – | – | No |
| 142 | Methods in Microbiology | 2.6 | 27th | Q3 | – | – | No |
| 143 | Iranian Journal of Microbiology | 2.6 | 26th | Q3 | ESCI | – | Yes |
| 144 | Tropical Parasitology | 2.5 | 26th | Q3 | – | – | No |
| 145 | Applied Microscopy | 2.5 | 25th | Q3 | – | – | Yes |
| 146 | Journal of Infection in Developing Countries | 2.4 | 25th | Q3 | SCIE | – | Yes |
| 147 | Microbe (Netherlands) | 2.4 | 24th | Q4 | ESCI | – | Yes |
| 148 | Current Medical Mycology | 2.4 | 23rd | Q4 | – | – | Yes |
| 149 | Enfermedades Infecciosas y Microbiologia Clinica | 2.4 | 23rd | Q4 | SCIE | – | No |
| 150 | Medical Mycology Case Reports | 2.3 | 22nd | Q4 | ESCI | – | Yes |
| 151 | Microbiology Australia | 2.3 | 22nd | Q4 | ESCI | – | Yes |
| 152 | Journal of Foraminiferal Research | 2.3 | 21st | Q4 | SCIE | – | No |
| 153 | Indian Journal of Medical Microbiology | 2.2 | 21st | Q4 | SCIE | – | No |
| 154 | Journal of Microbiology, Biotechnology and Food Sciences | 2.2 | 20th | Q4 | ESCI | – | No |
| 155 | Access Microbiology | 2.1 | 20th | Q4 | – | – | Yes |
| 156 | Journal of Pure and Applied Microbiology | 2.1 | 19th | Q4 | ESCI | – | Yes |
| 157 | Revista Iberoamericana de Micologia | 2 | 19th | Q4 | SCIE | – | No |
| 158 | Exploration of Immunology | 1.9 | 18th | Q4 | – | – | Yes |
| 159 | Microbiology (Russian Federation) | 1.8 | 18th | Q4 | SCIE | – | No |
| 160 | Iranian Journal of Medical Microbiology | 1.8 | 17th | Q4 | – | – | No |
| 161 | Turkish Journal of Biology | 1.8 | 17th | Q4 | SCIE | – | Yes |
| 162 | Annals of Clinical and Laboratory Science | 1.7 | 16th | Q4 | SCIE | – | No |
| 163 | Journal of Fungal Research | 1.6 | 16th | Q4 | – | – | No |
| 164 | Journal of General and Applied Microbiology | 1.5 | 15th | Q4 | SCIE | – | No |
| 165 | Mycota | 1.5 | 15th | Q4 | – | – | No |
| 166 | Passer Journal of Basic and Applied Sciences | 1.5 | 14th | Q4 | – | – | Yes |
| 167 | Novel Research in Microbiology Journal | 1.4 | 14th | Q4 | – | – | No |
| 168 | Microbial Biosystems | 1.4 | 13th | Q4 | – | – | Yes |
| 169 | Acta Microbiologica Sinica | 1.3 | 13th | Q4 | – | – | No |
| 170 | Allelopathy Journal | 1.2 | 12th | Q4 | – | – | No |
| 171 | Regulatory Mechanisms in Biosystems | 1.2 | 12th | Q4 | ESCI | – | Yes |
| 172 | Protistology | 1.2 | 11th | Q4 | – | – | No |
| 173 | Problemy Osobo Opasnykh Infektsii | 1.1 | 11th | Q4 | – | – | Yes |
| 174 | Mikrobiolohichnyi Zhurnal | 1.1 | 10th | Q4 | – | – | No |
| 175 | Indian Journal of Microbiology Research | 1 | 9th | Q4 | – | – | No |
| 176 | Jundishapur Journal of Microbiology | 1 | 9th | Q4 | SCIE | – | No |
| 177 | Microbiology and Biotechnology Letters | 1 | 9th | Q4 | – | – | No |
| 178 | Journal of Bacteriology and Virology | 1 | 8th | Q4 | – | – | No |
| 179 | Malaysian Journal of Microbiology | 0.8 | 7th | Q4 | ESCI | – | No |
| 180 | Commagene Journal of Biology | 0.7 | 6th | Q4 | – | – | No |
| 181 | Journal of Food Safety and Food Quality | 0.7 | 6th | Q4 | SCIE | – | No |
| 182 | Antibiotiki i Khimioterapiya | 0.7 | 5th | Q4 | – | – | Yes |
| 183 | Acta Microbiologica Bulgarica | 0.6 | 5th | Q4 | – | – | No |
| 184 | Oxford Medical Case Reports | 0.6 | 4th | Q4 | ESCI | – | Yes |
| 185 | Molecular Genetics, Microbiology and Virology | 0.5 | 4th | Q4 | SCIE | – | No |
| 186 | Chinese Journal of Microbiology and Immunology | 0.5 | 3rd | Q4 | – | – | No |
| 187 | Indonesian Journal of Tropical and Infectious Disease | 0.4 | 3rd | Q4 | – | – | Yes |
| 188 | Korean Journal of Microbiology | 0.3 | 2nd | Q4 | – | – | No |
| 189 | Problems of Infectious and Parasitic Diseases | 0.3 | 2nd | Q4 | – | – | Yes |
| 190 | Chinese Journal of Experimental and Clinical Virology | 0.3 | 1st | Q4 | – | – | No |
| 191 | Gomal Journal of Medical Sciences | 0.3 | 1st | Q4 | ESCI | – | Yes |
| 192 | Journal of Medical Pest Control | 0.2 | 0th | Q4 | – | – | No |
| 193 | Birkhauser Advances in Infectious Diseases | 0.1 | 0th | Q4 | – | – | No |